Omega-3 and Sports Injuries (more)

Anonymous found, to his surprise, that his martial-arts injuries healed faster after he started taking flaxseed oil (2 T/day). A comment about Popeye vitamins led him to stop taking flaxseed oil. Within ten days, his gums got worse, and his sports injuries became more painful. He has written again:

After going off flaxseed oil for about ten days and seeing all sorts of negative side effects, I have now been back on it for about ten days (this time with four tablespoons a day instead of two), and I am totally back to where I was before I stopped. Gums aren’t bleeding at all, joints and tendons don’t ache, and I feel great. Anecdotal evidence yes, but very persuasive to me. I have kept taking four tablespoons instead of the previously normal two because I think it increases my mental acuity

Very persuasive to me, too, regardless of what it is called.

The Resource Curse

In an excellent Authors@Google talk based on his book The Birth of Plenty — about the increase in GDP growth that started around the Industrial Revolution — William Bernstein mentions what he calls “The Resource Curse”:

If all your wealth comes out of a couple of holes in the ground, the quickest way to become wealthy . . . is control of those holes and access to those holes. It breeds corruption, and it breeds poor government, and it drains the entrepreneurial spirit. The best way to get rich is to have no natural resources at all. Think Singapore, think Japan.

Could the same be true of science? Could access to resources — say, a lot of grant money or expensive equipment — breed corruption and poor government, and drain the entrepreneurial spirit? It isn’t obvious why not. Surely human nature is essentially the same in both places. This may have something to do with Gary Taubes’ complaints about poor nutritional science in Good Calories, Bad Calories.

I rarely mention in this blog my animal learning research, which in recent years has been about exactly this — with animals (rats and pigeons). The results of our experiments are easy to sum up: When animals have access to rich sources of food, it drains the entrepreneurial spirit. In psychology-speak, when the probability of reward for actions is high, there is less variation in what animals do than when the probability of reward is low. I got into this line of research by accident.

Self-Experimentation in Medical Discovery

An editorial by William Bains, a biotechnologist and entrepreneur, questions the usual drug development process:

Translational Medicine [about going from research to practice] conferences are full of discussions of PET fMRI, gene arrays and proteomics, far beyond the means of the GPs that see 95% of patients, and divorced from the simple clinical observations that resulted in the discovery of drugs as diverse as aspirin and viagra.

Because this is the way that biomedical research (especially drug research) is done, it is assumed that the features of this process are features that have to be part of the biomedical research process. These include:

(i) that only professionals operating in established organizations can have the knowledge to identify new areas of medicines research;

(ii) that biomedical research can only be done using cutting edge technology, which is enormously expensive;

(iii) that only tests on huge numbers of people can validate a new approach.

None of these is true.

There is precedent for other ways of doing things:

The majority of clinical advances in the last 20 years of dermatology have been made by individuals working outside the mainstream of academic research, but possessing a keen observational eye, strong, skeptical analytical skills and constant contact with patients

Science in Action: Omega-3 (simple reaction time)

A friend who has known me for years said I became more talkative recently — around the time I started taking flaxseed oil. In the letter-counting task I have been using, there is an increase in error rate at the same time that flaxseed oil is reducing reaction time — I become more “jumpy”. It is as if flaxseed oil lowers a threshold for action.

Maybe I could measure this. Following some of Greg’s principles, I devised what experimental psychologists call a simple reaction time task: I see colored circles on my laptop screen and press a key on the keyboard as quickly as possible when a circle appears. The computer beeps 0-4 times depending on how fast I respond.

With the letter-counting task, I kept improving for at least 100 sessions. With this task, I stopped improving (getting faster) after about 2 sessions. I took 4 T flaxseed oil around 2 pm and measured my reaction time before and after. Here are the results.

flaxseed oil and simple reaction time

My reaction time decreased with roughly the time course I’d seen in other tests. The percentage decrease was unsurprisingly small but it was quite clear. It was hard to tell how long it lasted.

I was impressed how easy the whole thing was. It only took about an hour to write the experiment-running program (because I could modify something I already had) and the necessary pretraining (learning the task) was trivial (a few minutes, in contrast to weeks with the letter-counting task). I’m unsure how much follow-up of this I will do but it was reassuring to find similar results (flaxseed oil improves performance) in another task.

Games and Self-Experimentation

On Friday I had tea with Greg Niemeyer, a Berkeley art professor whose medium is games. I wanted to “gamify” the task I have been using to measure brain function. It is a letter-counting task: I see 4 letters and respond as fast as possible how many are A, B, C, or D. This takes about 600 msec — I’ve gotten a lot faster. Each session has 4 blocks of 50 trials and lasts a few minutes. From each session I get an average reaction time. I have been doing experiments to measure the effect of flaxseed oil (high in omega-3) on this task.

The task is quick, portable (requires only a laptop) and provides 200 fine-grained measurements (reaction times) per session. Flaxseed oil, I have found, not only produces long-lasting improvement in brain function (lasting weeks) but also a short-lived improvement that starts an hour or two after ingestion and lasts several hours. I developed the letter-counting task to measure the time course of the short-lived improvement. To measure the time course, I do the task every half-hour or so. The task has also turned out to be good for discovering other everyday events, such as exercise, that affect brain function. So far I have data from about 450 sessions.

It hasn’t been hard. It could be more fun. The more fun, the easier the research and the more likely other people will do it. Games are fun. Can I make the task more fun by making it more like a game? I asked Greg what makes games enjoyable. In rough order of importance (most important first), he mentioned four things:

1. The right amount of difficulty. Too easy we get bored; too difficult we get frustrated. Mihaly Csikszentmihalyi has made this point.

2. Lots of feedback.

3. Varying problems to solve.

4. Color and sound.

I will try adding these to the letter-counting task. I made a simple RT task with elements of #2 (feedback) and #4 (color & sound). It was much too easy but I am sure that #2 and #4 made it more pleasant.

A London Times article about medical self-experimentation.

Why Do We Like Warm Food?

Yesterday I cooked some chicken. Today I reheated the leftovers. While eating them, I had a gruesome thought: Warm food is more pleasant than food at room temperature. Could the evolutionary reason be that it is better to eat freshly-killed meat (warm) than meat killed yesterday (room temperature)? Or did a preference for warm food evolve because it caused us to prefer cooked food (sterilized) to uncooked food (unsterilized)?

Sure, thermoregulation is involved. We like warm food more when we’re cold; we like cold food more when we’re hot. Michel Cabanac has done brilliant experiments about our changing preference for hot and cold environments. But there is an overall preference for warm food. We like warm food even when we’re not cold.

In spite of thousands of books and articles promoting this or that “natural” diet, it has been incredibly hard to determine what our ancient ancestors ate, the diet that presumably fits us best. One way has been to ask what modern-day hunter-gatherers eat. Not only do their diets vary widely but also they are clearly not typical: They live in meager environments. So that is hopeless, although Weston Price showed that there was a lot to be learned by studying earlier foodways. Price was surprised to find how much those ancient foodways differed from each other yet all produced good health.

The most basic questions about our ancient diet remain unanswered. Did our ancestors eat lots of meat (savannah evolution) or lots of fish (aquatic ape theory) or neither (vegetarian proponents)? In spite of looking, Price never found a group that ate little meat that was in the best health, so I doubt the vegetarians. I suspect ancient peoples ate lots of fish at first and then started eating lots of meat as they spread away from the coasts. My main evidence for the fish is my omega-3 results that imply our brains work best with lots of omega-3. My main evidence for the meat is the huge popularity among boys of video games that contain elements of hunting. It’s hardly great evidence, of course, since the popularity of those games, and of actual hunting, has other plausible explanations.

This is why my omega-3 self-experimentation interests me so much. It is a way to figure out the best diet for our brain. It relies on fast simple cheap easy-to-control experiments that anyone can do, rather than on epidemiology (correlations) or expensive slow hard-to-control clinical trials that often involve unusual people.

The Secret and Self-Experimentation

The Secret, of course, is the huge best seller that makes a claim that on its face sounds delusional: You can get what you want by thinking about it. Years ago I stayed in a bed-and-breakfast room rented by a woman whose refrigerator had a collage with pictures and words showing money and prosperity. Clearly she believed that imagining these things would help achieve them.

Previously I described a cable-TV experiment that shows there is something to this. Here, in addition, is some self-experimentation:

Back in the 80′s when I first started work as a nurse, I decided to spend one week using only superlatives & compliments when dealing with my co-workers and patients. I 1st wanted to see if they would ‘call’ me on it & just tell me to stop the silliness. Then I wanted to see if it made a difference in my life, &/or theirs. . . . I freely complimented the docs, nurses, ancillary help, etc. At the end of the week, I had people telling me, ‘I don’t know what it is about you, but I just love spending time around you.’

My mom tells a similar story. In seventh grade she went to a new school where she didn’t know anyone. It was very bad year in terms of making friends. The night before the first day of eighth grade she had a dream. In the dream she was at school and it was just as terrible as seventh grade. She woke up and thought, “No, I can’t go through that again, it was too awful.” She wondered what she could possibly do to change things. Well, she thought, I could smile at everyone “like a damn fool” — whether she felt like smiling or not. In fact, this worked. Not much later a girl she admired said to her, “People say you’re a lot more friendly this year.” Eighth grade turned out a lot better than seventh grade.

Fuzzy Logic and Self-Experimentation (part 1)

Fuzzy logic, which started with a 1965 paper by Lotfi Zadeh, a professor of computer science, is an advanced form of engineering; self-experimentation is a kind of primitive science. They seem to be at opposite ends of a continuum. As science advances — as knowledge becomes wider and more accurate — it becomes more and more useful, gradually becoming engineering. Fuzzy logic is an especially useful form of engineering.

A few years ago I attended a talk by Zadeh in the Berkeley Physics Department colloquium series. He showed a little movie of a platform moving back and forth to balance three linked poles. It was staggering that this was possible. It is a classic problem in control theory. Here is an example with two linked poles:

Fuzzy logic has proved especially useful in building control systems. An early example was furnace control; one of the first real-life examples was a Japanese subway system. Many consumer electronic products, especially those from Japan, use fuzzy logic. One of my Omron blood pressure meters uses fuzzy logic, says the box. (Omron now uses the term IntelliSense instead.)

When an engineer builds a control system, he doesn’t start from scratch, choosing from among all possibilities. Rather, he tries to embody in a computer program what a person would do. The program embodies a series of rules. Fuzzy logic provided a new and better language for describing those rules. It “bring[s] the reasoning used by computers closer to that used by people,” Zadeh has said. People use “vague” rules: If you are near a corner, slow down. Now it was easy to add such rules to control systems.

Science in Action: Exercise (15-minute walk twice more)

As part of my digression into the effects of exercise, I tested the effect of a 15-minute walk (= on a treadmill at about 2.8 miles/hour) twice more. Here are the results:

effect of 15-minute walk (2nd test)
effect of 15-minute walk (3rd test)

Here is the result (posted earlier) of the first test:

effect of 15-minute walk (1st test)

Here is a test of a 40-minute walk:

effect of 40-minute walk

What do I learn from all this? For my omega-3 experiments, which might cover 6 hours, I should keep the walking involved under 15 minutes. If I want to get some sort of mental benefit from walking, I should spend 40 minutes or more. Less obvious is this: I take these results to indicate the existence of a mechanism that “turns up” our brain when we are doing stuff and turns it “down” when we are inactive. This suggests what Stone-Age activity consisted of: more than 15 minutes of walking. This also suggests that whatever the benefits of exercise, they require more than 15 minutes of walking to obtain.

The practical question these results raise is how to use this effect to help me with what I do all day — most of which, such as writing, seems to be incompatible with walking. Walking breaks every few hours? What about running 10 minutes every few hours?

Gary Taubes’ new book on food and weight comes out today. Taubes agrees with what I say in The Shangri-La Diet: Exercise is a poor way to lose weight. The results above provide a different reason to exercise, of course. But the details should change. My impression is that most people focus on burning calories; whereas these results suggest choosing exercise that best produces this reaction-time-lowering effect.

Spider Science

The success of my self-experimentation has puzzled me. The individual discoveries (a new way to lose weight, a new way to improve mood, sleep-related stuff, the fast effects of omega-3) seem normal; someone would have found them. It’s their combination that’s strange. Scientists who study weight control do not discover anything about mood, for example. But I did.

An ancient (2001) essay by Paul Graham is about how the future lies with web-based applications. No more Microsoft Word. One of Graham’s stories sheds light on my puzzle:

I studied click trails of people taking the test drive [of Graham’s web-based application] and found that at a certain step they would get confused and click on the browser’s Back button. . . . So I added a message at that point, telling users that they were nearly finished, and reminding them not to click on the Back button. , . . The number of people completing the test drive rose immediately from 60% to 90%. . . . Our revenue growth increased by 50%, just from that change.

I studied click trails. He examined a rich data set, looking for hypotheses to test. I practiced what I’ll call spider science: I waited for something to happen. When it did, I started to study it, just as a spider moves to the part of the web with the fly. Here are examples:

1. A change in what I ate for breakfast caused me to wake up early much more often. I did many little experiments to find out why.

2. Watching TV early one morning seemed to have improved my mood the next day. This led to a lot of research to figure out why and how to control the effect.

3. After I started to stand more, my sleep improved. I made many measurements to see if this was cause and effect and if so what the function looked like (the function relating hours of standing to sleep improvement).

4. In Paris I lost my appetite. This started the research that led to the Shangri-La Diet.

5. The morning after I took some omega-3 capsules, my balance improved. This led to experiments to see if it was cause and effect and if so what the function (balance vs. amount of omega-3) looked like.

6. One day I took flaxseed oil at an unusual time. My mental scores suddenly improved. I started to study these short-term effects.

7. While studying these short-term effects, I noticed improvements shortly after exercise. I started to study the effect of exercise.

Graham studied click trails partly because he could so easily act on anything he learned, partly because it was his company and he was so committed to its success. The seven examples I have given all came about partly because I could easily act on what I noticed and partly because I would directly benefit from learning more.

Conventional scientists do not practice spider science. They do not continuously monitor or search out large rich data sets hoping to find something they can act on. They can’t afford to, it’s unconventional, it’s too risky, it won’t pay off soon enough, they probably couldn’t act on what they found, etc. Later in Graham’s essay he marvels that big companies develop any software at all. Microsoft is like “a mountain that can walk.” Likewise, I’m impressed that scientists operating under the usual constraints manage to discover anything. You might think tenure allows them to relax, wait, take chances, and do things they weren’t trained to do, but it doesn’t work out that way.